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D

DEAMINATION - Static variable in class org.sbolstandard.core2.SystemsBiologyOntology

Removal of an amine group from a molecule, often under the addition of water (SBO:0000401).

DECARBONYLATION - Static variable in class org.sbolstandard.core2.SystemsBiologyOntology

Removal of a carbonyl group (-C-O-) from a molecule, usually as carbon monoxide (SBO:0000400).

DECARBOXYLATION - Static variable in class org.sbolstandard.core2.SystemsBiologyOntology

A process in which a carboxyl group (COOH) is removed from a molecule as carbon dioxide (SBO:0000399).

DEGRADATION - Static variable in class org.sbolstandard.core2.SystemsBiologyOntology

Complete disappearance of a physical entity (SBO:0000179).

DEPHOSPHORYLATION - Static variable in class org.sbolstandard.core2.SystemsBiologyOntology

Removal of a phosphate group (-H2PO4) from a chemical entity (SBO:0000330).

DEPROTONATION - Static variable in class org.sbolstandard.core2.SystemsBiologyOntology

Removal of a proton (hydrogen ion H+) from a chemical entity (SBO:0000213).

detectFeatures(String, String, String, String, String, String) - Static method in class org.sbolstandard.core2.SnapGene

Detect features in a sequence using a SnapGene Server

detectFeatures(String, String, String, String, String, String, boolean) - Static method in class org.sbolstandard.core2.SnapGene

Detect features in a sequence using a SnapGene Server

DirectionType - Enum in org.sbolstandard.core2

Represents all direction types for a FunctionalComponent object.

DISCRETE_FRAMEWORK - Static variable in class org.sbolstandard.core2.SystemsBiologyOntology

Modelling approach where the quantities of participants are considered discrete, and represented by integer values (SBO:0000063).

DISSOCIATION - Static variable in class org.sbolstandard.core2.SystemsBiologyOntology

Transformation of a non-covalent complex that results in the formation of several independent biochemical entities (SBO:0000180).

DNA - Static variable in class org.sbolstandard.core2.ComponentDefinition

Deprecated.

DNA - Static variable in class org.sbolstandard.core2.SequenceOntology

An attribute describing a sequence consisting of nucleobases bound to a repeating unit made of a 2-deoxy-D-ribose ring connected to a phosphate backbone.

DNA_MOLECULE - Static variable in class org.sbolstandard.core2.ComponentDefinition

A physical entity consisting of a sequence of deoxyribonucleotide monophosphates; a deoxyribonucleic acid (DNA).

DNA_REGION - Static variable in class org.sbolstandard.core2.ComponentDefinition

A physical entity consisting of a sequence of deoxyribonucleotide monophosphates; a deoxyribonucleic acid.

DNA_REPLICATION - Static variable in class org.sbolstandard.core2.SystemsBiologyOntology

Process in which a DNA duplex is transformed into two identical DNA duplexes (SBO:0000204).

DOUBLE - Static variable in class org.sbolstandard.core2.SequenceOntology

A stand attribute that it indicates it is composed of a double strand.

DUAL_ACTIVITY_MODIFIER - Static variable in class org.sbolstandard.core2.SystemsBiologyOntology

A modifier that can exhibit either inhibitory or stimulatory effects on a process depending on the context in which it occurs (SBO:0000595).

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