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DEAMINATION
- Static variable in class org.sbolstandard.core2.
SystemsBiologyOntology
Removal of an amine group from a molecule, often under the addition of water (
SBO:0000401
).
DECARBONYLATION
- Static variable in class org.sbolstandard.core2.
SystemsBiologyOntology
Removal of a carbonyl group (-C-O-) from a molecule, usually as carbon monoxide (
SBO:0000400
).
DECARBOXYLATION
- Static variable in class org.sbolstandard.core2.
SystemsBiologyOntology
A process in which a carboxyl group (COOH) is removed from a molecule as carbon dioxide (
SBO:0000399
).
DEGRADATION
- Static variable in class org.sbolstandard.core2.
SystemsBiologyOntology
Complete disappearance of a physical entity (
SBO:0000179
).
DEPHOSPHORYLATION
- Static variable in class org.sbolstandard.core2.
SystemsBiologyOntology
Removal of a phosphate group (-H2PO4) from a chemical entity (
SBO:0000330
).
DEPROTONATION
- Static variable in class org.sbolstandard.core2.
SystemsBiologyOntology
Removal of a proton (hydrogen ion H+) from a chemical entity (
SBO:0000213
).
detectFeatures(String, String, String, String, String, String)
- Static method in class org.sbolstandard.core2.
SnapGene
Detect features in a sequence using a SnapGene Server
detectFeatures(String, String, String, String, String, String, boolean)
- Static method in class org.sbolstandard.core2.
SnapGene
Detect features in a sequence using a SnapGene Server
DirectionType
- Enum in
org.sbolstandard.core2
Represents all direction types for a
FunctionalComponent
object.
DISCRETE_FRAMEWORK
- Static variable in class org.sbolstandard.core2.
SystemsBiologyOntology
Modelling approach where the quantities of participants are considered discrete, and represented by integer values (
SBO:0000063
).
DISSOCIATION
- Static variable in class org.sbolstandard.core2.
SystemsBiologyOntology
Transformation of a non-covalent complex that results in the formation of several independent biochemical entities (
SBO:0000180
).
DNA
- Static variable in class org.sbolstandard.core2.
ComponentDefinition
Deprecated.
DNA
- Static variable in class org.sbolstandard.core2.
SequenceOntology
An attribute describing a sequence consisting of nucleobases bound to a repeating unit made of a 2-deoxy-D-ribose ring connected to a phosphate backbone.
DNA_MOLECULE
- Static variable in class org.sbolstandard.core2.
ComponentDefinition
A physical entity consisting of a sequence of deoxyribonucleotide monophosphates; a deoxyribonucleic acid (
DNA
).
DNA_REGION
- Static variable in class org.sbolstandard.core2.
ComponentDefinition
A physical entity consisting of a sequence of deoxyribonucleotide monophosphates; a deoxyribonucleic acid.
DNA_REPLICATION
- Static variable in class org.sbolstandard.core2.
SystemsBiologyOntology
Process in which a DNA duplex is transformed into two identical DNA duplexes (
SBO:0000204
).
DOUBLE
- Static variable in class org.sbolstandard.core2.
SequenceOntology
A stand attribute that it indicates it is composed of a double strand.
DUAL_ACTIVITY_MODIFIER
- Static variable in class org.sbolstandard.core2.
SystemsBiologyOntology
A modifier that can exhibit either inhibitory or stimulatory effects on a process depending on the context in which it occurs (
SBO:0000595
).
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