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P

PALMITOYLATION - Static variable in class org.sbolstandard.core2.SystemsBiologyOntology

Addition of a palmitoyl group (CH3-[CH2]14-CO-) to a chemical entity (SBO:0000218).

PARTICIPANT_ROLE - Static variable in class org.sbolstandard.core2.SystemsBiologyOntology

The function of a physical or conceptual entity, that is its role, in the execution of an event or process (SBO:0000003).

Participation - Class in org.sbolstandard.core2

Represents a Participation object in the SBOL data model.

PETRI_NET_TRANSITION - Static variable in class org.sbolstandard.core2.SystemsBiologyOntology

A process that can modify the state of petri net 'places' (SBO:0000591).

PHENOTYPE - Static variable in class org.sbolstandard.core2.SystemsBiologyOntology

A biochemical network can generate phenotypes or affects biological processes (SBO:0000358).

PHOSPHORYLATION - Static variable in class org.sbolstandard.core2.SystemsBiologyOntology

Addition of a phosphate group (-H2PO4) to a chemical entity (SBO:0000216).

Plan - Class in org.sbolstandard.core2

Represents an Plan object in the SBOL data model.

PLAN - Static variable in class org.sbolstandard.core2.TopLevel

The abbreviation for the Plan type in URI

POSITIONAL_RELATIONSHIP - Static variable in class org.sbolstandard.core2.SystemsBiologyOntology

The connectedness between entities as related by their position (SBO:0000413).

POTENTIATOR - Static variable in class org.sbolstandard.core2.SystemsBiologyOntology

Substance that increases the probability of a chemical reaction without itself being consumed or transformed by the reaction (SBO:0000021).

PRENYLATION - Static variable in class org.sbolstandard.core2.SystemsBiologyOntology

Addition of a prenyl group (generic sense) to a chemical entity (SBO:0000221).

PRIMER_BINDING_SITE - Static variable in class org.sbolstandard.core2.SequenceOntology

Non-covalent primer binding site for initiation of replication, transcription, or reverse transcription (SO:0005850)

PROCESS - Static variable in class org.sbolstandard.core2.SystemsBiologyOntology

A sequential series of actions, motions, or occurrences, such as chemical reactions, that affect one or more entities in a phenomenologically characteristic manner (SBO:0000375).

PRODUCT - Static variable in class org.sbolstandard.core2.SystemsBiologyOntology

Substance that is produced in a reaction (SBO:0000011).

PRODUCTION - Static variable in class org.sbolstandard.core2.SystemsBiologyOntology

Generation of a material or conceptual entity (SBO:0000393).

PROMOTER - Static variable in class org.sbolstandard.core2.SequenceOntology

A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery (SO:0000167).

PROMOTER - Static variable in class org.sbolstandard.core2.SystemsBiologyOntology

A region of DNA to which various transcription factors and RNA polymerase must bind in order to initiate transcription for a gene (SBO:0000598).

PROTEIN - Static variable in class org.sbolstandard.core2.ComponentDefinition

A physical entity consisting of a sequence of amino acids; a protein monomer; a single polypeptide chain (Protein).

PROTEIN_COMPLEX_FORMATION - Static variable in class org.sbolstandard.core2.SystemsBiologyOntology

The process by which two or more proteins interact non-covalently to form a protein complex (SBO:0000526).

PROTONATION - Static variable in class org.sbolstandard.core2.SystemsBiologyOntology

Addition of a proton (H+) to a chemical entity (SBO:0000212).

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