org.sbolstandard.core2

Class SnapGene

java.lang.Object

org.sbolstandard.core2.SnapGene

public class SnapGene
extends Object

Provides a Java API to a SnapGene Server instance.

Author:

Chris Myers

Constructor Summary

Constructors

Constructor and Description
SnapGene()

Method Summary

Modifier and Type	Method and Description
static SBOLDocument	detectFeatures(String sequence, String uriPrefix, String displayId, String version, String pngFileName, String name) Detect features in a sequence using a SnapGene Server
static SBOLDocument	detectFeatures(String sequence, String uriPrefix, String displayId, String version, String pngFileName, String name, boolean circular) Detect features in a sequence using a SnapGene Server

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SnapGene

public SnapGene()

Method Detail

detectFeatures

public static SBOLDocument detectFeatures(String sequence,
                                          String uriPrefix,
                                          String displayId,
                                          String version,
                                          String pngFileName,
                                          String name)

Detect features in a sequence using a SnapGene Server

Parameters:

sequence - The sequence to detect features on

uriPrefix - The uriPrefix for the generated SBOL object

displayId - The displayId for the generated SBOL object

version - The version for the generated SBOL object

pngFileName - The filename for the PNG file generated by the SnapGene Server

name - The name for the generated SBOL object

Returns:

An SBOLDocument for the annotated sequence

detectFeatures

public static SBOLDocument detectFeatures(String sequence,
                                          String uriPrefix,
                                          String displayId,
                                          String version,
                                          String pngFileName,
                                          String name,
                                          boolean circular)

Detect features in a sequence using a SnapGene Server

Parameters:

sequence - The sequence to detect features on

uriPrefix - The uriPrefix for the generated SBOL object

displayId - The displayId for the generated SBOL object

version - The version for the generated SBOL object

pngFileName - The filename for the PNG file generated by the SnapGene Server

name - The name for the generated SBOL object

circular - Set topology to be circular

Returns:

An SBOLDocument for the annotated sequence