Package | Description |
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org.sbolstandard.core2 |
Modifier and Type | Class and Description |
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class |
Activity
Represents a Activity object in the SBOL data model.
|
class |
Agent
Represents an Agent object in the SBOL data model.
|
class |
Attachment
Represents a Attachment object in the SBOL data model.
|
class |
Collection
Represents an Collection object in the SBOL data model.
|
class |
CombinatorialDerivation
Represents a CombinatorialDerivation object in the SBOL data model.
|
class |
ComponentDefinition
Represents a ComponentDefinition object in the SBOL data model.
|
class |
Experiment
Represents an Collection object in the SBOL data model.
|
class |
ExperimentalData
Represents an Collection object in the SBOL data model.
|
class |
GenericTopLevel
Represents a GenericTopLevel object in the SBOL data model.
|
class |
Implementation
Represents an Implementation object in the SBOL data model.
|
class |
Model
Represents a Model object in the SBOL data model.
|
class |
ModuleDefinition
Represents a ModuleDefinition object in the SBOL data model.
|
class |
Plan
Represents an Plan object in the SBOL data model.
|
class |
Sequence
Represents a Sequence object in the SBOL data model.
|
Modifier and Type | Method and Description |
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TopLevel |
SBOLDocument.createCopy(TopLevel topLevel)
Creates an identical copy of the given top-level, and then adds the created
top-level to the corresponding list of top-levels in this SBOL document.
|
TopLevel |
SBOLDocument.createCopy(TopLevel topLevel,
String displayId)
Creates a copy of the given top-level with the given display ID, and then
adds the created top-level to the corresponding list of top-levels in this
SBOL document.
|
TopLevel |
SBOLDocument.createCopy(TopLevel topLevel,
String displayId,
String version)
Creates a copy of the given top-level with the given display ID and version,
and then adds the created top-level to the corresponding list of top-levels
in this SBOL document.
|
TopLevel |
SBOLDocument.createCopy(TopLevel topLevel,
String URIprefix,
String displayId,
String version)
Creates a copy of the given top-level with the given URI prefix, display ID
and version, and then adds the created top-level to the corresponding list of
top-levels in this SBOL document.
|
TopLevel |
Implementation.getBuilt()
Returns the component definition or module definition referenced by the built field.
|
TopLevel |
Usage.getEntity()
Returns the entity referenced by this usage.
|
TopLevel |
SBOLDocument.getTopLevel(URI topLevelURI)
Returns the top-level matching the given identity URI from this SBOL
document's lists of top-levels.
|
TopLevel |
Measure.getUnit()
Returns the unit referenced by this measure.
|
TopLevel |
SBOLDocument.rename(TopLevel topLevel,
String displayId)
Renames the given top-level's display ID with the given one.
|
TopLevel |
SBOLDocument.rename(TopLevel topLevel,
String displayId,
String version)
Renames the given top-level's display ID and version with the given ones.
|
TopLevel |
SBOLDocument.rename(TopLevel topLevel,
String URIprefix,
String displayId,
String version)
Renames the given top-level's URI prefix, display ID, and version with the
given ones.
|
Modifier and Type | Method and Description |
---|---|
Set<TopLevel> |
SBOLDocument.getByWasDerivedFrom(URI wasDerivedFrom)
Retrieves a set of top-levels in this SBOL document whose
wasDerivedFrom field matches the given one. |
Set<TopLevel> |
Collection.getMembers()
Returns the set of objects referenced by this Collection instance's members.
|
Set<TopLevel> |
SBOLDocument.getTopLevels()
Returns the set of all top-levels owned by this SBOL document.
|
Modifier and Type | Method and Description |
---|---|
TopLevel |
SBOLDocument.createCopy(TopLevel topLevel)
Creates an identical copy of the given top-level, and then adds the created
top-level to the corresponding list of top-levels in this SBOL document.
|
TopLevel |
SBOLDocument.createCopy(TopLevel topLevel,
String displayId)
Creates a copy of the given top-level with the given display ID, and then
adds the created top-level to the corresponding list of top-levels in this
SBOL document.
|
TopLevel |
SBOLDocument.createCopy(TopLevel topLevel,
String displayId,
String version)
Creates a copy of the given top-level with the given display ID and version,
and then adds the created top-level to the corresponding list of top-levels
in this SBOL document.
|
TopLevel |
SBOLDocument.createCopy(TopLevel topLevel,
String URIprefix,
String displayId,
String version)
Creates a copy of the given top-level with the given URI prefix, display ID
and version, and then adds the created top-level to the corresponding list of
top-levels in this SBOL document.
|
void |
SBOLDocument.createRecursiveCopy(SBOLDocument document,
TopLevel topLevel) |
SBOLDocument |
SBOLDocument.createRecursiveCopy(TopLevel topLevel)
Creates an identical copy of the given top-level and returns it in a new
SBOLDocument.
|
void |
SBOLDocument.removeTopLevel(TopLevel topLevel)
Method to remove a TopLevel object
|
TopLevel |
SBOLDocument.rename(TopLevel topLevel,
String displayId)
Renames the given top-level's display ID with the given one.
|
TopLevel |
SBOLDocument.rename(TopLevel topLevel,
String displayId,
String version)
Renames the given top-level's display ID and version with the given ones.
|
TopLevel |
SBOLDocument.rename(TopLevel topLevel,
String URIprefix,
String displayId,
String version)
Renames the given top-level's URI prefix, display ID, and version with the
given ones.
|
void |
Implementation.setBuilt(TopLevel built)
Sets the the built property to the given one.
|
abstract void |
IdentifiedVisitor.visit(Identified identified,
TopLevel topLevel)
Visit an identified object
|