Uses of Class
org.sbolstandard.core2.SequenceAnnotation

Packages that use SequenceAnnotation

Package	Description
org.sbolstandard.core2

Uses of SequenceAnnotation in org.sbolstandard.core2

Methods in org.sbolstandard.core2 that return SequenceAnnotation

Modifier and Type	Method and Description
SequenceAnnotation	ComponentDefinition.createSequenceAnnotation(String displayId, String locationId) Creates a child sequence annotation for this component definition with the given arguments, and then adds to this component definition's list of sequence annotations.
SequenceAnnotation	ComponentDefinition.createSequenceAnnotation(String displayId, String locationId, int at) Creates a child sequence annotation for this component definition with the given arguments, and then adds to its list of sequence annotations.
SequenceAnnotation	ComponentDefinition.createSequenceAnnotation(String displayId, String locationId, int start, int end) Creates a child sequence annotation for this component definition with the given arguments, and then adds to this ComponentDefinition's list of sequence annotations.
SequenceAnnotation	ComponentDefinition.createSequenceAnnotation(String displayId, String locationId, int start, int end, OrientationType orientation) Creates a child sequence annotation for this ComponentDefinition instance with the given arguments, and then adds to this ComponentDefinition's list of sequence annotations.
SequenceAnnotation	ComponentDefinition.createSequenceAnnotation(String displayId, String locationId, int at, OrientationType orientation) Creates a child sequence annotation for this component definition with the given arguments, and then adds to its list of sequence annotations.
SequenceAnnotation	ComponentDefinition.createSequenceAnnotation(String displayId, String locationId, OrientationType orientation) Creates a child sequence annotation for this component definition with the given arguments, and then adds to this component definition's list of sequence annotations.
SequenceAnnotation	ComponentDefinition.getSequenceAnnotation(Component component) Returns the sequence annotation that references to the given component.
SequenceAnnotation	ComponentDefinition.getSequenceAnnotation(String displayId) Returns the sequence annotation matching the given display ID.
SequenceAnnotation	ComponentDefinition.getSequenceAnnotation(URI sequenceAnnotationURI) Returns the instance matching the given SequenceAnnotation URI from the list of sequence annotations.

Methods in org.sbolstandard.core2 that return types with arguments of type SequenceAnnotation

Modifier and Type	Method and Description
Set<SequenceAnnotation>	ComponentDefinition.getSequenceAnnotations() Returns the set of sequence annotations owned by this component definition.
List<SequenceAnnotation>	ComponentDefinition.getSortedSequenceAnnotations() Returns a sorted list of sequence annotations owned by this component definition.

Methods in org.sbolstandard.core2 with parameters of type SequenceAnnotation

Modifier and Type	Method and Description
int	SequenceAnnotation.compareTo(SequenceAnnotation sa)
boolean	ComponentDefinition.removeSequenceAnnotation(SequenceAnnotation sequenceAnnotation) Removes the given sequence annotation from the list of sequence annotations.