org.sbolstandard.core2

Class SequenceConstraint

java.lang.Object

org.sbolstandard.core2.Identified

org.sbolstandard.core2.SequenceConstraint

public class SequenceConstraint
extends Identified

Represents a SequenceConstraint object in the SBOL data model.

Version:

2.1

Author:

Zhen Zhang, Nicholas Roehner, Chris Myers

Method Summary

Modifier and Type	Method and Description
boolean	equals(Object obj)
Component	getObject() Returns the object component this sequence constraint refers to.
ComponentDefinition	getObjectDefinition() Returns the component definition that defines the object component of this sequence constraint.
URI	getObjectIdentity() Returns the object component identity this sequence constraint refers to.
URI	getObjectURI() Returns the object component's identity URI that this sequence constraint refers to.
RestrictionType	getRestriction() Returns the restriction property of this sequence constraint.
URI	getRestrictionURI() Returns the restriction property of this sequence constraint.
Component	getSubject() Returns the subject component this sequence constraint refers to.
ComponentDefinition	getSubjectDefinition() Returns the component definition that defines the subject component of this sequence constraint.
URI	getSubjectIdentity() Returns the subject component identity this sequence constraint refers to.
URI	getSubjectURI() Returns the subject component's identity URI that this sequence constraint refers to.
int	hashCode()
void	setObject(URI objectURI) Sets the reference object component's identity URI to the given one.
void	setRestriction(RestrictionType restriction) Sets the restriction property to the given one.
void	setRestriction(URI restrictionURI) Sets the reference subject component's identity URI to the given one.
void	setSubject(URI subjectURI) Sets the reference subject Component URI to the given subjectURI.
String	toString()

Methods inherited from class org.sbolstandard.core2.Identified

addWasDerivedFrom, addWasGeneratedBy, clearAnnotations, clearWasDerivedFroms, clearWasGeneratedBys, containsWasDerivedFrom, containsWasGeneratedBy, createAnnotation, createAnnotation, createAnnotation, createAnnotation, createAnnotation, createAnnotation, getAnnotation, getAnnotations, getDescription, getDisplayId, getIdentity, getName, getPersistentIdentity, getVersion, getWasDerivedFrom, getWasDerivedFroms, getWasGeneratedBys, hasAnnotations, isSetDescription, isSetDisplayId, isSetName, isSetPersistentIdentity, isSetVersion, isSetWasDerivedFrom, removeAnnotation, removeWasDerivedFrom, removeWasGeneratedBy, setDescription, setName, setWasDerivedFrom, setWasDerivedFroms, setWasGeneratedBys, unsetDescription, unsetName, unsetWasDerivedFrom

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Method Detail

getRestriction

public RestrictionType getRestriction()

Returns the restriction property of this sequence constraint.

Returns:

the restriction property of this sequence constraint

getRestrictionURI

public URI getRestrictionURI()

Returns the restriction property of this sequence constraint.

Returns:

the restriction property of this sequence constraint

setRestriction

public void setRestriction(RestrictionType restriction)
                    throws SBOLValidationException

Sets the restriction property to the given one.

Parameters:

restriction - the restriction type to set to

Throws:

SBOLValidationException - if either of the following SBOL validation rule was violated: 11407, 11412.

setRestriction

public void setRestriction(URI restrictionURI)
                    throws SBOLValidationException

Sets the reference subject component's identity URI to the given one.

Parameters:

restrictionURI - the identity URI of the restriction to set to

Throws:

SBOLValidationException - if the following SBOL validation rule was violated: 11407.

getSubjectURI

public URI getSubjectURI()

Returns the subject component's identity URI that this sequence constraint refers to.

Returns:

the subject component's identity URI that this sequence constraint refers to

getSubjectIdentity

public URI getSubjectIdentity()

Returns the subject component identity this sequence constraint refers to.

If this sequence constraint's parent component definition is null, this method returns null. Otherwise, it returns its child component which is also referenced by this sequence constraint.

Returns:

the subject component identity this sequence constraint refers to

getSubject

public Component getSubject()

Returns the subject component this sequence constraint refers to.

If this sequence constraint's parent component definition is null, this method returns null. Otherwise, it returns its child component which is also referenced by this sequence constraint.

Returns:

the subject component this sequence constraint refers to

getSubjectDefinition

public ComponentDefinition getSubjectDefinition()

Returns the component definition that defines the subject component of this sequence constraint.

If this sequence constraint's parent component definition is null, this method returns null. Otherwise, it returns the component definition that defines the subject component of this sequence constraint.

Returns:

the component definition that defines the subject component of this sequence constraint

setSubject

public void setSubject(URI subjectURI)
                throws SBOLValidationException

Sets the reference subject Component URI to the given subjectURI.

Parameters:

subjectURI - the reference subject's identity URI of the subject component

Throws:

SBOLValidationException - if any of the following SBOL validation rules was violated: 11402, 11403, 11406.

getObjectURI

public URI getObjectURI()

Returns the object component's identity URI that this sequence constraint refers to.

Returns:

the object component's identity URI that this sequence constraint refers to

getObjectIdentity

public URI getObjectIdentity()

Returns the object component identity this sequence constraint refers to.

If this sequence constraint's parent component definition is null, this method returns null. Otherwise, it returns its child component which is also referenced by this sequence constraint.

Returns:

the object component identity this sequence constraint refers to

getObject

public Component getObject()

Returns the object component this sequence constraint refers to.

If this sequence constraint's parent component definition is null, this method returns null. Otherwise, it returns its child component which is also referenced by this sequence constraint.

Returns:

the object component this sequence constraint refers to

getObjectDefinition

public ComponentDefinition getObjectDefinition()

Returns the component definition that defines the object component of this sequence constraint.

If this sequence constraint's parent component definition is null, this method returns null. Otherwise, it returns the component definition that defines the object component of this sequence constraint.

Returns:

the component definition that defines the object component of this sequence constraint

setObject

public void setObject(URI objectURI)
               throws SBOLValidationException

Sets the reference object component's identity URI to the given one.

Parameters:

objectURI - the reference object component's identity URI to set to

Throws:

SBOLValidationException - if any of the following SBOL validation rules was violated: 11402, 11404, 11405.

hashCode

public int hashCode()

Overrides:

hashCode in class Identified

equals

public boolean equals(Object obj)

Overrides:

equals in class Identified

toString

public String toString()

Overrides:

toString in class Identified