org.sbolstandard.core2

Class ComponentInstance

java.lang.Object

org.sbolstandard.core2.Identified

org.sbolstandard.core2.Measured

org.sbolstandard.core2.ComponentInstance

Direct Known Subclasses:

Component, FunctionalComponent

public abstract class ComponentInstance
extends Measured

Represents a ComponentInstance object in the SBOL data model.

Version:

2.1

Author:

Zhen Zhang, Nicholas Roehner, Chris Myers

Method Summary

Modifier and Type	Method and Description
boolean	equals(Object obj)
AccessType	getAccess() Returns the access property.
ComponentDefinition	getDefinition() Returns the component definition referenced by this component or functional component.
URI	getDefinitionIdentity() Returns the component definition identity referenced by this component or functional component.
URI	getDefinitionURI() Returns the reference component definition URI.
int	hashCode()
void	setAccess(AccessType access) Sets the access property to the given one.
void	setDefinition(URI definition) Sets the definition property to the given one.
String	toString()

Methods inherited from class org.sbolstandard.core2.Measured

clearMeasures, createMeasure, getMeasure, getMeasure, getMeasures, removeMeasure

Methods inherited from class org.sbolstandard.core2.Identified

addWasDerivedFrom, addWasGeneratedBy, clearAnnotations, clearWasDerivedFroms, clearWasGeneratedBys, containsWasDerivedFrom, containsWasGeneratedBy, createAnnotation, createAnnotation, createAnnotation, createAnnotation, createAnnotation, createAnnotation, getAnnotation, getAnnotations, getDescription, getDisplayId, getIdentity, getName, getPersistentIdentity, getVersion, getWasDerivedFrom, getWasDerivedFroms, getWasGeneratedBys, hasAnnotations, isSetDescription, isSetDisplayId, isSetName, isSetPersistentIdentity, isSetVersion, isSetWasDerivedFrom, removeAnnotation, removeWasDerivedFrom, removeWasGeneratedBy, setDescription, setName, setWasDerivedFrom, setWasDerivedFroms, setWasGeneratedBys, unsetDescription, unsetName, unsetWasDerivedFrom

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Method Detail

getAccess

public AccessType getAccess()

Returns the access property.

Returns:

the access property

setAccess

public void setAccess(AccessType access)
               throws SBOLValidationException

Sets the access property to the given one.

Parameters:

access - the given access type ›to set to

Throws:

SBOLValidationException - if the following SBOL validation rule was violated: 10607

getDefinitionURI

public URI getDefinitionURI()

Returns the reference component definition URI.

Returns:

the reference component definition URI

getDefinitionIdentity

public URI getDefinitionIdentity()

Returns the component definition identity referenced by this component or functional component.

Returns:

null if the associated SBOLDocument instance is null or no matching component definition referenced by this component or functional component exists; or the matching component definition otherwise.

getDefinition

public ComponentDefinition getDefinition()

Returns the component definition referenced by this component or functional component.

Returns:

null if the associated SBOLDocument instance is null or no matching component definition referenced by this component or functional component exists; or the matching component definition otherwise.

setDefinition

public void setDefinition(URI definition)
                   throws SBOLValidationException

Sets the definition property to the given one.

Parameters:

definition - the given definition URI to set to

Throws:

SBOLValidationException - if either of the following SBOL validation rules was violated: 10602, 10604.

hashCode

public int hashCode()

Overrides:

hashCode in class Measured

equals

public boolean equals(Object obj)

Overrides:

equals in class Measured

toString

public String toString()

Overrides:

toString in class Measured