ComponentDefinition Member List

This is the complete list of members for ComponentDefinition, including all inherited members.

addDownstreamFlank(Component &target, std::string elements)	ComponentDefinition
addPropertyValue(std::string property_uri, std::string val)	SBOLObject
addUpstreamFlank(Component &target, std::string elements)	ComponentDefinition
applyToComponentHierarchy(void(*callback_fn)(ComponentDefinition *, void *)=NULL, void *user_data=NULL)	ComponentDefinition
assemble(std::vector< ComponentDefinition *> &list_of_components, std::string assembly_standard="")	ComponentDefinition
assemble(std::vector< ComponentDefinition *> &list_of_components, Document &doc, std::string assembly_standard="")	ComponentDefinition
assemble(std::vector< std::string > &list_of_uris, std::string assembly_standard="")	ComponentDefinition
assemblePrimaryStructure(std::vector< std::string > &primary_structure, std::string assembly_standard="")	ComponentDefinition
assemblePrimaryStructure(std::vector< ComponentDefinition *> &primary_structure, std::string assembly_standard="")	ComponentDefinition
assemblePrimaryStructure(std::vector< ComponentDefinition *> &primary_structure, Document &doc, std::string assembly_standard="")	ComponentDefinition
close()	SBOLObject	virtual
compare(SBOLObject *comparand)	SBOLObject
compile()	ComponentDefinition
ComponentDefinition(std::string uri="example", std::string type=BIOPAX_DNA, std::string version=VERSION_STRING)	ComponentDefinition	inline
ComponentDefinition(rdf_type type, std::string uri, std::string component_type, std::string version)	ComponentDefinition	inline
components	ComponentDefinition
copy(Document *target_doc=NULL, std::string ns="", std::string version="")	TopLevel
description	Identified
disassemble(int range_start=1)	ComponentDefinition
displayId	Identified
find(std::string uri)	SBOLObject
find_property(std::string uri)	SBOLObject
find_property_value(std::string uri, std::string value, std::vector< SBOLObject *> matches={})	SBOLObject
find_reference(std::string uri)	SBOLObject
generate(std::string uri)	TopLevel
generate(std::string uri, Agent &agent, Plan &plan, std::vector< Identified *> usages={})	TopLevel
getAnnotation(std::string property_uri)	SBOLObject
getClassName(std::string type)	SBOLObject
getDownstreamComponent(Component &current_component)	ComponentDefinition
getFirstComponent()	ComponentDefinition
getInSequentialOrder()	ComponentDefinition
getLastComponent()	ComponentDefinition
getPrimaryStructure()	ComponentDefinition
getProperties()	SBOLObject
getPropertyValue(std::string property_uri)	SBOLObject
getPropertyValues(std::string property_uri)	SBOLObject
getTypeURI()	SBOLObject	virtual
getUpstreamComponent(Component &current_component)	ComponentDefinition
hasDownstreamComponent(Component &current_component)	ComponentDefinition
hasUpstreamComponent(Component &current_component)	ComponentDefinition
identity	SBOLObject
insertDownstreamComponent(Component &target, ComponentDefinition &insert)	ComponentDefinition
insertUpstreamComponent(Component &target, ComponentDefinition &insert)	ComponentDefinition
isComplete(std::string &msg)	ComponentDefinition
isComplete()	ComponentDefinition
isRegular(std::string &msg)	ComponentDefinition
isRegular()	ComponentDefinition
name	Identified
participate(Participation &species)	ComponentDefinition
persistentIdentity	Identified
register_extension_class(std::string ns, std::string ns_prefix, std::string class_name)	SBOLObject	protected
roles	ComponentDefinition
sequenceAnnotations	ComponentDefinition
sequenceConstraints	ComponentDefinition
sequences	ComponentDefinition
setAnnotation(std::string property_uri, std::string val)	SBOLObject
setPropertyValue(std::string property_uri, std::string val)	SBOLObject
simpleCopy(std::string uri)	TopLevel
types	ComponentDefinition
updateSequence(std::string composite_sequence="")	ComponentDefinition
version	Identified
wasDerivedFrom	Identified
wasGeneratedBy	Identified